If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 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'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' 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=> 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 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'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' 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=> 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 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'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' 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=> 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 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'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' 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=> 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 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'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' 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=> 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 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'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' 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=> 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 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'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' 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=> 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 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'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' 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=> 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 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'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' 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=> 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 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'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' 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=> 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 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'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' 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=> 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 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'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' 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=> 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 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'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' 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=> 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 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'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' 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=> 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 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'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' 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=> 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 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'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' 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=> 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 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'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' 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=> 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 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'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' 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=> 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 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'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' 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=> 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 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'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' 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=> 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 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'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' 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=> 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 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'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' 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=> 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 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'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' 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=> 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ), 'gf_id' => 'HOM05D000678', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000678' ), 'data_identifier' => 'HOM05D000678', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000678', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36090' => 'bna', 'A02p25180' => 'bna', 'A02p43310' => 'bna', 'A03p07620' => 'bna', 'A05p31450' => 'bna', 'A06p31090' => 'bna', 'A06p44580' => 'bna', 'A08p26880' => 'bna', 'A09p23270' => 'bna', 'A09p25600' => 'bna', 'A10p22840' => 'bna', 'A10p27740' => 'bna', 'Aa31LG11G13390' => 'aar', 'Aa31LG1G17470' => 'aar', 'Aa31LG2G8700' => 'aar', 'Aa31LG3G17440' => 'aar', 'Aa31LG8G5080' => 'aar', 'Aa31LG9G9300' => 'aar', 'Actinidia02413' => 'ach', 'Actinidia05564' => 'ach', 'Actinidia10264' => 'ach', 'Actinidia10265' => 'ach', 'Actinidia14926' => 'ach', 'Actinidia15901' => 'ach', 'Actinidia16025' => 'ach', 'Actinidia16399' => 'ach', 'Actinidia16691' => 'ach', 'Actinidia26985' => 'ach', 'Actinidia35104' => 'ach', 'Actinidia36342' => 'ach', 'Actinidia38364' => 'ach', 'Ah.01g018560' => 'amhyb', 'Ah.01g024190' => 'amhyb', 'Ah.09g236350' => 'amhyb', 'Ah.11g045180' => 'amhyb', 'Ah.11g051110' => 'amhyb', 'Ah.16g101530' => 'amhyb', 'AL1G40030' => 'aly', 'AL3G31460' => 'aly', 'AL5G10140' => 'aly', 'AL6G20040' => 'aly', 'AL6G27110' => 'aly', 'AL6G48750' => 'aly', 'AL8G41800' => 'aly', 'Aqoxy2G02446' => 'aox', 'Aqoxy3G00193' => 'aox', 'Aqoxy5G02099' => 'aox', 'Aqoxy6G00632' => 'aox', 'Aqoxy7G02838' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01BTST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.15NCRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2N4H4D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X9CLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ADX4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UH2MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9B5H7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5PF9Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0HY35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C4USX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DEZ1Z8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP082Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EE9515' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7BNA1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYF1N1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4ECE6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I1SEHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZTE6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J53UV4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K9IHFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXG980' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH5ZQA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX13K8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY38CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6YRJD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RP799M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SJ1Q20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T858PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VDG15V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSYI4K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XF22CN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE5IDL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH1JH4' => 'arhy', 'AT1G25300' => 'ath', 'AT2G01190' => 'ath', 'AT3G18230' => 'ath', 'AT4G05150' => 'ath', 'AT5G09620' => 'ath', 'AT5G16220' => 'ath', 'AT5G64430' => 'ath', 'ATR0315G114' => 'atr', 'ATR0681G374' => 'atr', 'ATR0800G102' => 'atr', 'Atru.chr1.1613' => 'acertr', 'Atru.chr10.2032' => 'acertr', 'Atru.chr11.244' => 'acertr', 'Atru.chr13.943' => 'acertr', 'Atru.chr6.1361' => 'acertr', 'Atru.chr6.1362' => 'acertr', 'Atru.chr9.920' => 'acertr', 'AUR62009041' => 'cqu', 'AUR62012511' => 'cqu', 'AUR62014688' => 'cqu', 'AUR62023220' => 'cqu', 'AUR62023265' => 'cqu', 'AUR62027078' => 'cqu', 'AUR62029922' => 'cqu', 'AUR62030917' => 'cqu', 'AUR62033782' => 'cqu', 'BcaB01g01883' => 'bca', 'BcaB01g04997' => 'bca', 'BcaB01g05129' => 'bca', 'BcaB03g12031' => 'bca', 'BcaB04g20783' => 'bca', 'BcaB05g23698' => 'bca', 'BcaB07g29743' => 'bca', 'BcaB07g30754' => 'bca', 'BcaB08g36856' => 'bca', 'BcaB08g37195' => 'bca', 'BcaC01g01684' => 'bca', 'BcaC03g16221' => 'bca', 'BcaC03g18263' => 'bca', 'BcaC04g18899' => 'bca', 'BcaC04g21376' => 'bca', 'BcaC04g21596' => 'bca', 'BcaC05g28649' => 'bca', 'BcaC06g31326' => 'bca', 'BcaC06g34210' => 'bca', 'BcaC09g48781' => 'bca', 'BcaNung05769' => 'bca', 'BolC1t04561H' => 'bol', 'BolC2t12405H' => 'bol', 'BolC3t13381H' => 'bol', 'BolC3t18445H' => 'bol', 'BolC3t19600H' => 'bol', 'BolC5t33492H' => 'bol', 'BolC7t43703H' => 'bol', 'BolC9t55866H' => 'bol', 'BolC9t56101H' => 'bol', 'BolC9t58920H' => 'bol', 'BolC9t59545H' => 'bol', 'BraA01t03688Z' => 'bra', 'BraA02t07505Z' => 'bra', 'BraA02t09257Z' => 'bra', 'BraA03t10090Z' => 'bra', 'BraA05t21984Z' => 'bra', 'BraA06t26052Z' => 'bra', 'BraA06t27332Z' => 'bra', 'BraA08t34635Z' => 'bra', 'BraA09t37929Z' => 'bra', 'BraA09t38134Z' => 'bra', 'BraA10t44351Z' => 'bra', 'BraA10t44825Z' => 'bra', 'C01p46000' => 'bna', 'C02p40030' => 'bna', 'C02p63370' => 'bna', 'C03p08860' => 'bna', 'C03p61850' => 'bna', 'C03p73010' => 'bna', 'C05p47790' => 'bna', 'C07p31640' => 'bna', 'C09p30010' => 'bna', 'C09p32540' => 'bna', 'C09p60800' => 'bna', 'C09p67850' => 'bna', 'CAN.G1052.2' => 'can', 'CAN.G1061.24' => 'can', 'CAN.G1129.45' => 'can', 'CAN.G424.34' => 'can', 'CAN.G504.49' => 'can', 'CAN.G610.21' => 'can', 'CAN.G625.57' => 'can', 'CAN.G723.24' => 'can', 'CANSAT54G2740' => 'cansat', 'CANSAT56G1015' => 'cansat', 'CANSAT80G2524' => 'cansat', 'CANSAT80G2533' => 'cansat', 'CARHR026180' => 'chi', 'CARHR093580' => 'chi', 'CARHR143730' => 'chi', 'CARHR147500' => 'chi', 'CARHR197090' => 'chi', 'CARHR203760' => 'chi', 'CARHR252400' => 'chi', 'CARHR278400' => 'chi', 'Carub.0001s2522' => 'cru', 'Carub.0003s1799' => 'cru', 'Carub.0003s2763' => 'cru', 'Carub.0005s0017' => 'cru', 'Carub.0006s1441' => 'cru', 'Carub.0006s3310' => 'cru', 'Carub.0008s2523' => 'cru', 'Ca_00184_v3' => 'car', 'Ca_06894_v3' => 'car', 'Ca_13780_v3' => 'car', 'Ca_17237_v3' => 'car', 'Ca_18414_v3' => 'car', 'Ca_18429_v3' => 'car', 'Ca_18472_v3' => 'car', 'Ca_25468_v3' => 'car', 'Cc00_g11830' => 'ccan', 'Cc02_g20560' => 'ccan', 'Cc04_g06810' => 'ccan', 'Cc07_g08520' => 'ccan', 'Cc10_g08240' => 'ccan', 'Cc11_g09610' => 'ccan', 'CDE02G3047' => 'cde', 'CDE02G3791' => 'cde', 'CDE04G2445' => 'cde', 'CDE07G0537' => 'cde', 'CDE08G1599' => 'cde', 'Cfa004801' => 'cfa', 'Cfa007890' => 'cfa', 'Cfa013830' => 'cfa', 'Cfa015832' => 'cfa', 'Cfa019725' => 'cfa', 'Ciclev10001267m.g' => 'ccl', 'Ciclev10007669m.g' => 'ccl', 'Ciclev10010444m.g' => 'ccl', 'Ciclev10011483m.g' => 'ccl', 'Ciclev10014450m.g' => 'ccl', 'Ciclev10015301m.g' => 'ccl', 'Ciclev10027233m.g' => 'ccl', 'Ciclev10030306m.g' => 'ccl', 'CiPaw.03G064900' => 'cil', 'CiPaw.05G026700' => 'cil', 'CiPaw.05G243000' => 'cil', 'CiPaw.07G161700' => 'cil', 'CiPaw.09G157000' => 'cil', 'CiPaw.11G021000' => 'cil', 'CiPaw.15G136200' => 'cil', 'ClCG01G022400' => 'cla', 'ClCG05G022440' => 'cla', 'ClCG06G014590' => 'cla', 'ClCG08G011870' => 'cla', 'ClCG09G016430' => 'cla', 'ClCG11G007670' => 'cla', 'COL.COLO4_05568' => 'col', 'COL.COLO4_09377' => 'col', 'COL.COLO4_31629' => 'col', 'COL.COLO4_32124' => 'col', 'COL.COLO4_35321' => 'col', 'COL.COLO4_38516' => 'col', 'Cpa.g.sc170.29' => 'cpa', 'Cpa.g.sc20.43' => 'cpa', 'Cpa.g.sc27.140' => 'cpa', 'Cpa.g.sc3.456' => 'cpa', 'Cpa.g.sc3.457' => 'cpa', 'Cpa.g.sc65.72' => 'cpa', 'CsaV3_1G004030' => 'csa', 'CsaV3_2G030490' => 'csa', 'CsaV3_2G033890' => 'csa', 'CsaV3_5G034630' => 'csa', 'CsaV3_6G049580' => 'csa', 'CsaV3_7G007400' => 'csa', 'CSS0005059' => 'camsi', 'CSS0011437' => 'camsi', 'CSS0013225' => 'camsi', 'CSS0016038' => 'camsi', 'CSS0026543' => 'camsi', 'CSS0026823' => 'camsi', 'CSS0030849' => 'camsi', 'CSS0030925' => 'camsi', 'CSS0032727' => 'camsi', 'CSS0033076' => 'camsi', 'CSS0038769' => 'camsi', 'CSS0041524' => 'camsi', 'CSS0047036' => 'camsi', 'CSS0047061' => 'camsi', 'CSS0047072' => 'camsi', 'CSS0047315' => 'camsi', 'DCAR_004157' => 'dca', 'DCAR_007267' => 'dca', 'DCAR_008089' => 'dca', 'DCAR_023628' => 'dca', 'DCAR_025902' => 'dca', 'DCAR_026752' => 'dca', 'DCAR_027118' => 'dca', 'DCAR_029281' => 'dca', 'Dinv08964' => 'din', 'Dinv16036' => 'din', 'Dinv16142' => 'din', 'Dinv16143' => 'din', 'Dinv17517' => 'din', 'Dinv22012' => 'din', 'Dinv22013' => 'din', 'Dinv31588' => 'din', 'Dinv34792' => 'din', 'Dinv40465' => 'din', 'Duzib041G0367' => 'dzi', 'Duzib068G1423' => 'dzi', 'Duzib093G1283' => 'dzi', 'Duzib116G0324' => 'dzi', 'Duzib132G0018' => 'dzi', 'Duzib133G0205' => 'dzi', 'Duzib205G2049' => 'dzi', 'Duzib235G1172' => 'dzi', 'Duzib248G0072' => 'dzi', 'Duzib248G0657' => 'dzi', 'Duzib251G0315' => 'dzi', 'Duzib268G0701' => 'dzi', 'ECA232G2721' => 'eca', 'ECA232G4267' => 'eca', 'ECA233G2834' => 'eca', 'ECA234G2420' => 'eca', 'ECA236G0682' => 'eca', 'ECA236G0774' => 'eca', 'ECA240G1966' => 'eca', 'ECA240G4724' => 'eca', 'ECA246G0908' => 'eca', 'ECA246G4963' => 'eca', 'EL10Ac2g04528' => 'bvu', 'EL10Ac5g11486' => 'bvu', 'EL10Ac6g14296' => 'bvu', 'EL10Ac8g19980' => 'bvu', 'EL10Ac9g22130' => 'bvu', 'Eucgr.B02854' => 'egr', 'Eucgr.D00762' => 'egr', 'Eucgr.F00455' => 'egr', 'Eucgr.F02792' => 'egr', 'Eucgr.G02235' => 'egr', 'Eucgr.I02580' => 'egr', 'Eucgr.L01821' => 'egr', 'FAN04G2980' => 'fan', 'FAN04G3032' => 'fan', 'FAN07G1955' => 'fan', 'FAN08G1730' => 'fan', 'FAN08G2739' => 'fan', 'FAN08G3466' => 'fan', 'FAN11G0235' => 'fan', 'FAN12G2310' => 'fan', 'FAN12G3926' => 'fan', 'FAN13G2901' => 'fan', 'FAN13G2912' => 'fan', 'FAN15G3422' => 'fan', 'FAN16G2688' => 'fan', 'FAN17G2574' => 'fan', 'FAN18G0284' => 'fan', 'FAN18G1272' => 'fan', 'FAN20G1088' => 'fan', 'FAN21G1949' => 'fan', 'FAN22G2322' => 'fan', 'FAN24G1997' => 'fan', 'FAN25G0180' => 'fan', 'FAN27G2102' => 'fan', 'FvH4_2g11130' => 'fve', 'FvH4_3g03730' => 'fve', 'FvH4_4g26650' => 'fve', 'FvH4_5g16730' => 'fve', 'FvH4_5g33880' => 'fve', 'Glyma.02G217500' => 'gma', 'Glyma.05G050800' => 'gma', 'Glyma.07G097900' => 'gma', 'Glyma.07G184400' => 'gma', 'Glyma.07G189000' => 'gma', 'Glyma.08G060300' => 'gma', 'Glyma.08G065000' => 'gma', 'Glyma.09G116000' => 'gma', 'Glyma.09G180100' => 'gma', 'Glyma.10G270200' => 'gma', 'Glyma.13G254300' => 'gma', 'Glyma.14G184700' => 'gma', 'Glyma.15G060600' => 'gma', 'Glyma.20G121100' => 'gma', 'Gohir.A03G179000' => 'ghi', 'Gohir.A04G116500' => 'ghi', 'Gohir.A05G166500' => 'ghi', 'Gohir.A05G217700' => 'ghi', 'Gohir.A05G264100' => 'ghi', 'Gohir.A05G314300' => 'ghi', 'Gohir.A06G114900' => 'ghi', 'Gohir.A06G132102' => 'ghi', 'Gohir.A06G208900' => 'ghi', 'Gohir.A07G059700' => 'ghi', 'Gohir.A11G166300' => 'ghi', 'Gohir.D02G202700' => 'ghi', 'Gohir.D04G158200' => 'ghi', 'Gohir.D05G169466' => 'ghi', 'Gohir.D05G169500' => 'ghi', 'Gohir.D05G219800' => 'ghi', 'Gohir.D05G266600' => 'ghi', 'Gohir.D05G324700' => 'ghi', 'Gohir.D06G127300' => 'ghi', 'Gohir.D06G212100' => 'ghi', 'Gohir.D07G064400' => 'ghi', 'Gohir.D11G172300' => 'ghi', 'Gorai.001G068000' => 'gra', 'Gorai.005G227800' => 'gra', 'Gorai.007G184900' => 'gra', 'Gorai.009G174700' => 'gra', 'Gorai.009G226800' => 'gra', 'Gorai.009G278600' => 'gra', 'Gorai.009G348900' => 'gra', 'Gorai.010G148800' => 'gra', 'Gorai.010G253900' => 'gra', 'Gorai.012G145600' => 'gra', 'GSVIVG01007882001' => 'vvi', 'GSVIVG01008346001' => 'vvi', 'GSVIVG01022694001' => 'vvi', 'GSVIVG01030974001' => 'vvi', 'HanXRQChr01g0009881' => 'han', 'HanXRQChr05g0150431' => 'han', 'HanXRQChr08g0213231' => 'han', 'HanXRQChr09g0262671' => 'han', 'HanXRQChr09g0262901' => 'han', 'HanXRQChr13g0424281' => 'han', 'HanXRQChr13g0425531' => 'han', 'HanXRQChr14g0459181' => 'han', 'HanXRQChr15g0477391' => 'han', 'HanXRQChr15g0482561' => 'han', 'HanXRQChr16g0529181' => 'han', 'HanXRQChr17g0534171' => 'han', 'HanXRQChr17g0539751' => 'han', 'HanXRQChr17g0558941' => 'han', 'HanXRQChr17g0567211' => 'han', 'Haze_00659' => 'cav', 'Haze_06595' => 'cav', 'Haze_06599' => 'cav', 'Haze_06600' => 'cav', 'Haze_10393' => 'cav', 'Haze_14186' => 'cav', 'Haze_18745' => 'cav', 'Haze_22503' => 'cav', 'Hma1.2p1_0010F.1_g006370' => 'hma', 'Hma1.2p1_0435F.1_g152590' => 'hma', 'Hma1.2p1_0767F.1_g215510' => 'hma', 'Hma1.2p1_0908F.1_g235700' => 'hma', 'Hma1.2p1_1515F.1_g288190' => 'hma', 'Hma1.2p1_3314F.1_g335180' => 'hma', 'HPP92_000911' => 'vpl', 'HPP92_008966' => 'vpl', 'HPP92_011835' => 'vpl', 'HPP92_011836' => 'vpl', 'HPP92_013707' => 'vpl', 'Hund10296' => 'sun', 'Hund13700' => 'sun', 'Hund16185' => 'sun', 'Hund25030' => 'sun', 'Lalb_Chr04g0252701' => 'lal', 'Lalb_Chr05g0221971' => 'lal', 'Lalb_Chr14g0370941' => 'lal', 'Lalb_Chr16g0383111' => 'lal', 'Lalb_Chr16g0383361' => 'lal', 'Lalb_Chr17g0338801' => 'lal', 'Lalb_Chr17g0344671' => 'lal', 'Lalb_Chr18g0060271' => 'lal', 'Lalb_Chr21g0308711' => 'lal', 'Lj1P1215T18' => 'lonja', 'Lj2C463G8' => 'lonja', 'Lj2g0003336' => 'lja', 'Lj2g0019763' => 'lja', 'Lj2g0020361' => 'lja', 'Lj2P429T42' => 'lonja', 'Lj3P879T13' => 'lonja', 'Lj4A183T29' => 'lonja', 'Lj4A742T40' => 'lonja', 'Lj4g0001813' => 'lja', 'Lj4g0017763' => 'lja', 'Lj5A153T53' => 'lonja', 'Lj5C267T7' => 'lonja', 'Lj5g0002524' => 'lja', 'Lj5P225T19' => 'lonja', 'Lj6A753T52' => 'lonja', 'Lj6g0009166' => 'lja', 'Lj9C342G6' => 'lonja', 'Lj9P424T21' => 'lonja', 'LjContig00408g0007749' => 'lja', 'LjContig00408g0014570' => 'lja', 'LjContig00408g0016534' => 'lja', 'LjContig00408g0018040' => 'lja', 'Lsat_1_v5_gn_1_102101' => 'lsa', 'Lsat_1_v5_gn_3_62121' => 'lsa', 'Lsat_1_v5_gn_3_83600' => 'lsa', 'Lsat_1_v5_gn_4_14800' => 'lsa', 'Lsat_1_v5_gn_4_155540' => 'lsa', 'Lsat_1_v5_gn_4_158201' => 'lsa', 'Lsat_1_v5_gn_6_107080' => 'lsa', 'Lsat_1_v5_gn_7_20421' => 'lsa', 'Lsat_1_v5_gn_7_82961' => 'lsa', 'Lsat_1_v5_gn_8_142181' => 'lsa', 'Lsat_1_v5_gn_8_42480' => 'lsa', 'Lsat_1_v5_gn_9_113821' => 'lsa', 'Manes.02G071700' => 'mes', 'Manes.05G120200' => 'mes', 'Manes.06G064500' => 'mes', 'Manes.07G046900' => 'mes', 'Manes.14G107500' => 'mes', 'Manes.16G019200' => 'mes', 'Manes.17G034100' => 'mes', 'MBI02_g00643_MAGBIO' => 'mbi', 'MBI02_g25177_MAGBIO' => 'mbi', 'MBI02_g25178_MAGBIO' => 'mbi', 'MBI02_g36453_MAGBIO' => 'mbi', 'MBI09_g25149_MAGBIO' => 'mbi', 'MBI16_g26238_MAGBIO' => 'mbi', 'MD05G1050100' => 'mdo', 'MD05G1327000' => 'mdo', 'MD06G1221200' => 'mdo', 'MD08G1208700' => 'mdo', 'MD10G1057400' => 'mdo', 'MD10G1305100' => 'mdo', 'MD13G1034900' => 'mdo', 'MD14G1230400' => 'mdo', 'MD15G1392800' => 'mdo', 'MD16G1036800' => 'mdo', 'MD17G1160300' => 'mdo', 'Medtr1g109470' => 'mtr', 'Medtr2g010160' => 'mtr', 'Medtr4g091530' => 'mtr', 'Medtr4g092850' => 'mtr', 'Medtr5g067120' => 'mtr', 'Medtr5g067160' => 'mtr', 'Medtr5g067200' => 'mtr', 'Medtr5g087980' => 'mtr', 'Medtr5g088040' => 'mtr', 'Medtr5g088090' => 'mtr', 'Medtr5g088100' => 'mtr', 'Medtr5g088120' => 'mtr', 'Medtr5g088140' => 'mtr', 'Medtr5g088160' => 'mtr', 'Medtr5g088590' => 'mtr', 'Medtr5g088620' => 'mtr', 'Medtr5g488180' => 'mtr', 'Medtr5g488190' => 'mtr', 'Medtr5g488200' => 'mtr', 'Medtr6g082400' => 'mtr', 'Medtr8g009860' => 'mtr', 'Medtr8g106245' => 'mtr', 'MELO3C001068.2' => 'cme', 'MELO3C008162.2' => 'cme', 'MELO3C011109.2' => 'cme', 'MELO3C012278.2' => 'cme', 'MELO3C017326.2' => 'cme', 'MELO3C018562.2' => 'cme', 'MELO3C032887.2' => 'cme', 'Migut.B00518' => 'egut', 'Migut.D01601' => 'egut', 'Migut.E00377' => 'egut', 'Migut.H00240' => 'egut', 'Migut.H00295' => 'egut', 'Migut.H01527' => 'egut', 'Migut.L01001' => 'egut', 'MSTRG.13172' => 'ama', 'MSTRG.13559' => 'ama', 'MSTRG.14668' => 'ama', 'MSTRG.20251' => 'ama', 'MSTRG.2214' => 'ama', 'MSTRG.23595' => 'ama', 'MSTRG.5297' => 'ama', 'MSTRG.7639' => 'ama', 'MSTRG.864' => 'ama', 'Nitab4.5_0000150g0070' => 'nta', 'Nitab4.5_0000291g0030' => 'nta', 'Nitab4.5_0000649g0170' => 'nta', 'Nitab4.5_0000694g0090' => 'nta', 'Nitab4.5_0000753g0200' => 'nta', 'Nitab4.5_0001456g0060' => 'nta', 'Nitab4.5_0001558g0070' => 'nta', 'Nitab4.5_0002112g0180' => 'nta', 'Nitab4.5_0002135g0060' => 'nta', 'Nitab4.5_0002335g0040' => 'nta', 'Nitab4.5_0003464g0020' => 'nta', 'Nitab4.5_0004703g0050' => 'nta', 'Nitab4.5_0011266g0020' => 'nta', 'Nitab4.5_0011386g0010' => 'nta', 'Nitab4.5_0011439g0020' => 'nta', 'Nitab4.5_0025819g0010' => 'nta', 'Nn1g03837' => 'nnu', 'Nn1g05682' => 'nnu', 'Nn2g12035' => 'nnu', 'Nn2g12697' => 'nnu', 'Nn3g17693' => 'nnu', 'Nn3g17962' => 'nnu', 'Nn4g22040' => 'nnu', 'Nn4g22073' => 'nnu', 'Nn4g23966' => 'nnu', 'Nn5g27358' => 'nnu', 'Nn5g29769' => 'nnu', 'Oeu000990.1' => 'oeu', 'Oeu007192.1' => 'oeu', 'Oeu014207.1' => 'oeu', 'Oeu014298.1' => 'oeu', 'Oeu016135.1' => 'oeu', 'Oeu017515.1' => 'oeu', 'Oeu025231.1' => 'oeu', 'Oeu027685.1' => 'oeu', 'Oeu028705.1' => 'oeu', 'Oeu028706.1' => 'oeu', 'Oeu042390.1' => 'oeu', 'Oeu048370.1' => 'oeu', 'Oeu050385.1' => 'oeu', 'Oeu050814.1' => 'oeu', 'Oeu053815.1' => 'oeu', 'Oeu057762.2' => 'oeu', 'Os01g0139200' => 'osa', 'Os02g0809100' => 'osa', 'Os04g0283800' => 'osa', 'Os07g0556300' => 'osa', 'Peaxi162Scf00016g03411' => 'pax', 'Peaxi162Scf00179g00536' => 'pax', 'Peaxi162Scf00272g00002' => 'pax', 'Peaxi162Scf00564g00614' => 'pax', 'Peaxi162Scf00674g00022' => 'pax', 'Peaxi162Scf00683g00336' => 'pax', 'Peaxi162Scf00703g00210' => 'pax', 'Peaxi162Scf00877g00021' => 'pax', 'Peaxi162Scf01127g00002' => 'pax', 'Peaxi162Scf01127g00004' => 'pax', 'Peaxi162Scf01127g00020' => 'pax', 'PGR004G1075' => 'pgr', 'PGR031G1720' => 'pgr', 'PGR042G2786' => 'pgr', 'PGR083G1471' => 'pgr', 'PGR119G1609' => 'pgr', 'PGR142G2771' => 'pgr', 'PGSC0003DMG400003106' => 'stu', 'PGSC0003DMG400005666' => 'stu', 'PGSC0003DMG400005971' => 'stu', 'PGSC0003DMG400006383' => 'stu', 'PGSC0003DMG400022398' => 'stu', 'PGSC0003DMG400026379' => 'stu', 'PGSC0003DMG400030661' => 'stu', 'Phvul.002G215900' => 'pvu', 'Phvul.002G220700' => 'pvu', 'Phvul.004G002000' => 'pvu', 'Phvul.004G153300' => 'pvu', 'Phvul.006G199200' => 'pvu', 'Phvul.007G032500' => 'pvu', 'Phvul.008G184600' => 'pvu', 'Potri.001G285800' => 'ptr', 'Potri.002G108800' => 'ptr', 'Potri.004G032200' => 'ptr', 'Potri.004G095600' => 'ptr', 'Potri.008G124700' => 'ptr', 'Potri.009G080200' => 'ptr', 'Potri.010G119500' => 'ptr', 'Potri.011G041100' => 'ptr', 'Potri.012G053500' => 'ptr', 'Potri.017G119100' => 'ptr', 'Prupe.1G317300' => 'ppe', 'Prupe.1G540000' => 'ppe', 'Prupe.3G148700' => 'ppe', 'Prupe.3G153000' => 'ppe', 'Prupe.4G034500' => 'ppe', 'Prupe.5G225400' => 'ppe', 'Prupe.8G076200' => 'ppe', 'Psat1g034960' => 'psa', 'Psat1g212640' => 'psa', 'Psat1g212680' => 'psa', 'Psat2g063880' => 'psa', 'Psat5g246880' => 'psa', 'Psat6g224080' => 'psa', 'Psat7g005280' => 'psa', 'Psat7g104120' => 'psa', 'Psat7g107280' => 'psa', 'PSO017G6534' => 'pso', 'PSO356G0016' => 'pso', 'PSO478G2516' => 'pso', 'PSO541G6463' => 'pso', 'PSO675G0331' => 'pso', 'PSO675G3864' => 'pso', 'PSO700G0097' => 'pso', 'PSO761G0011' => 'pso', 'QL01p010688' => 'qlo', 'QL01p010763' => 'qlo', 'QL01p010825' => 'qlo', 'QL02p050274' => 'qlo', 'QL04p012112' => 'qlo', 'QL05p080818' => 'qlo', 'QL05p080866' => 'qlo', 'QL10p026814' => 'qlo', 'QL11p026666' => 'qlo', 'QL12p039994' => 'qlo', 'QL93p0145_0016' => 'qlo', 'RcHm_v2.0_Chr4g0434361' => 'rch', 'RcHm_v2.0_Chr6g0269391' => 'rch', 'RcHm_v2.0_Chr7g0179361' => 'rch', 'RcHm_v2.0_Chr7g0233221' => 'rch', 'Rhsim02G0118800' => 'rsi', 'Rhsim05G0182000' => 'rsi', 'Rhsim06G0069300' => 'rsi', 'Rhsim06G0069400' => 'rsi', 'Rhsim06G0190100' => 'rsi', 'Rhsim08G0088600' => 'rsi', 'Rhsim09G0103400' => 'rsi', 'Rhsim10G0072800' => 'rsi', 'Rhsim12G0141200' => 'rsi', 'Rhsim13G0168900' => 'rsi', 'Sabra02G0085600' => 'sbr', 'Sabra04G0018400' => 'sbr', 'Sabra04G0064700' => 'sbr', 'Sabra04G0064800' => 'sbr', 'Sabra08G0094200' => 'sbr', 'Sabra09G0062100' => 'sbr', 'Sabra10G0089900' => 'sbr', 'Sabra11G0027900' => 'sbr', 'Sabra12G0037300' => 'sbr', 'Sabra16G0178200' => 'sbr', 'Sabra17G0098400' => 'sbr', 'SalBow1G5877' => 'sbo', 'SalBow3G1282' => 'sbo', 'SalBow3G1523' => 'sbo', 'SalBow3G1765' => 'sbo', 'SalBow6G0530' => 'sbo', 'SalBow6G1212' => 'sbo', 'SalBow7G2539' => 'sbo', 'SalBow7G3340' => 'sbo', 'SalBow8G2881' => 'sbo', 'SalBow8G3645' => 'sbo', 'Sc04g0003330' => 'sci', 'Sc04g0005960' => 'sci', 'Sc05g0008200' => 'sci', 'Sc08g0004190' => 'sci', 'Sc10g0001040' => 'sci', 'Sc11g0003800' => 'sci', 'Sed0002041' => 'sed', 'Sed0002355' => 'sed', 'Sed0008720' => 'sed', 'Sed0009379' => 'sed', 'Sed0011837' => 'sed', 'Sed0014043' => 'sed', 'Sed0019532' => 'sed', 'Sed0023690' => 'sed', 'Sed0024136' => 'sed', 'SEGI_01378' => 'sgi', 'SEGI_04766' => 'sgi', 'SEGI_08358' => 'sgi', 'SEGI_11023' => 'sgi', 'SEGI_17950' => 'sgi', 'SGA_v2.0_scaffold121G33138' => 'sas', 'SGA_v2.0_scaffold14G06913' => 'sas', 'SGA_v2.0_scaffold202G41470' => 'sas', 'SGA_v2.0_scaffold32G12952' => 'sas', 'SGA_v2.0_scaffold342G49391' => 'sas', 'SGA_v2.0_scaffold36G14564' => 'sas', 'SGA_v2.0_scaffold38G15009' => 'sas', 'SHI16241' => 'shi', 'SMO367G0277' => 'smo', 'SMO367G0506' => 'smo', 'Solyc01g106320.2' => 'sly', 'Solyc02g079360.3' => 'sly', 'Solyc02g086360.3' => 'sly', 'Solyc02g091670.1' => 'sly', 'Solyc03g118870.4' => 'sly', 'Solyc04g007460.4' => 'sly', 'Solyc04g076820.1' => 'sly', 'Solyc05g008830.3' => 'sly', 'Sopen00g013110' => 'spe', 'Sopen01g048690' => 'spe', 'Sopen02g024160' => 'spe', 'Sopen02g031020' => 'spe', 'Sopen02g036280' => 'spe', 'Sopen03g037820' => 'spe', 'Sopen04g002530' => 'spe', 'Sopen04g030530' => 'spe', 'Sopen05g004590' => 'spe', 'Sopen11g011850' => 'spe', 'Sp1g22930' => 'spa', 'Sp2g12650' => 'spa', 'Sp2g27520' => 'spa', 'Sp3g16350' => 'spa', 'Sp6g03850' => 'spa', 'Sp6g13930' => 'spa', 'Sp6g27940' => 'spa', 'Sp6g33760' => 'spa', 'TAR374G0028' => 'tar', 'TAR374G1719' => 'tar', 'TAR376G0926' => 'tar', 'TAR622G0820' => 'tar', 'TAR626G0669' => 'tar', 'TAR627G1079' => 'tar', 'TAR628G1260' => 'tar', 'TAR629G1340' => 'tar', 'THA.LOC104799711' => 'tha', 'THA.LOC104805056' => 'tha', 'THA.LOC104807191' => 'tha', 'THA.LOC104818530' => 'tha', 'THA.LOC104820938' => 'tha', 'THA.LOC104823972' => 'tha', 'Thecc.02G124700' => 'tca', 'Thecc.02G221000' => 'tca', 'Thecc.03G043200' => 'tca', 'Thecc.04G128600' => 'tca', 'Thecc.06G202100' => 'tca', 'Thecc.08G076400' => 'tca', 'Thhalv10000795m.g' => 'esa', 'Thhalv10004027m.g' => 'esa', 'Thhalv10009340m.g' => 'esa', 'Thhalv10013332m.g' => 'esa', 'Thhalv10020240m.g' => 'esa', 'Thhalv10028630m.g' => 'esa', 'TPR.G15373' => 'tpr', 'TPR.G27036' => 'tpr', 'TPR.G29014' => 'tpr', 'TPR.G32612' => 'tpr', 'TPR.G4821' => 'tpr', 'TPR.G7207' => 'tpr', 'TWI12G0645' => 'twi', 'TWI23G0011' => 'twi', 'TWI31G0040' => 'twi', 'TWI38G0501' => 'twi', 'TWI53G1549' => 'twi', 'TWI56G0996' => 'twi', 'TWI59G0244' => 'twi', 'TWI60G1409' => 'twi', 'TWI63G1609' => 'twi', 'TWI75G0363' => 'twi', 'TWI79G1500' => 'twi', 'unitig_0.g2340' => 'ugi', 'unitig_26.g10009' => 'ugi', 'unitig_26.g9379' => 'ugi', 'unitig_27.g25258' => 'ugi', 'unitig_37.g12794' => 'ugi', 'unitig_52.g17378' => 'ugi', 'unitig_747.g21245' => 'ugi', 'unitig_899.g14516' => 'ugi', 'unitig_899.g15601' => 'ugi', 'vmacro01902' => 'vma', 'vmacro10606' => 'vma', 'vmacro10607' => 'vma', 'vmacro16431' => 'vma', 'vmacro21365' => 'vma', 'vmacro22955' => 'vma', 'VMungo0251G1732' => 'vmu', 'VMungo0251G2272' => 'vmu', 'VMungo0251G2694' => 'vmu', 'VMungo0464G0840' => 'vmu', 'VMungo0464G1982' => 'vmu', 'VMungo0540G2052' => 'vmu', 'VMungo0647G2118' => 'vmu', 'VMungo0720G0145' => 'vmu', 'VMungo0720G1183' => 'vmu', 'VMungo1127G1757' => 'vmu', 'VMungo1215G1971' => 'vmu', 'Zm00001eb053550' => 'zma', 'Zm00001eb085450' => 'zma', 'Zm00001eb124810' => 'zma', 'Zm00001eb191620' => 'zma', 'Zm00001eb258550' => 'zma', 'Zm00001eb323860' => 'zma', 'Zm00001eb335590' => 'zma' ) $gf_id = 'HOM05D000678' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000678' ) $data_identifier = 'HOM05D000678' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 33, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 11, 'bra' => (int) 12, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 6, 'camsi' => (int) 16, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 10, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 12, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 22, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 8, 'qlo' => (int) 11, 'rch' => (int) 4, 'rsi' => (int) 10, 'sbr' => (int) 11, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 5, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 10, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 9, 'vma' => (int) 6, 'vmu' => (int) 11, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb335590' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1